PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25329.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 310aa    MW: 36350.2 Da    PI: 7.0973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25329.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.5e-1811101197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ffkv++p     s r+ +p+ f++  +++ + + +++l++ sgr+W vk   r  +++ ++ +GW+ F ++n L + Df+vFkl++r+ef  vv ++
  KHN25329.1  11 FFKVFLP--ERHSERMLIPNAFVRLPQLQGRIPEDVILRNASGRVWHVKT--RYVGEKLYFDDGWRAFHQENCLGQADFLVFKLERRNEF--VVLIL 101
                 8899955..5555679*******77788888999****************..777778**************************998988..88776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-206103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-187102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-189101No hitNo description
PROSITE profilePS5086313.4229104IPR003340B3 DNA binding domain
PfamPF023621.6E-1511101IPR003340B3 DNA binding domain
SMARTSM010199.3E-1411104IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-8184306IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-7185307IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSTGAQRYPD FFKVFLPERH SERMLIPNAF VRLPQLQGRI PEDVILRNAS GRVWHVKTRY  60
VGEKLYFDDG WRAFHQENCL GQADFLVFKL ERRNEFVVLI LQLSTQCQKP LVKMEEEQAA  120
TQLVEEPDSS SDDDDEESGE EFSAGFNLQS HHRRACKRET ASSSNPNAED PLPEYVFDPQ  180
MCIHPENHFF KAKLYRTRPN ELHIPGNAIQ EFSLTLPEKI TLICCQPCQR KDIPMNELGD  240
YHHNLTPIRI KYQEVTGRVC RWQDHRIYIK GWASFCRRNK IERNDTCFCE VISGEDQVVK  300
TLRVHVARRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984200.0BT098420.1 Soybean clone JCVI-FLGm-16J3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541119.20.0PREDICTED: B3 domain-containing protein REM20 isoform X1
TrEMBLA0A0B2QZC50.0A0A0B2QZC5_GLYSO; B3 domain-containing protein REM21
TrEMBLK7LT280.0K7LT28_SOYBN; Uncharacterized protein
STRINGGLYMA12G05241.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.11e-22B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]